Biochemistry and Molecular Biology

Publications 1975 2018

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Review article
2018

Breaking symmetry in viral icosahedral capsids as seen through the lenses of X-ray crystallography and cryo-electron microscopy

Parent, K. N., Schrad, J. R. & Cingolani, G. Feb 7 2018 In : Viruses. 10, 2, 67

Research output: Contribution to journalReview article

Cryoelectron Microscopy
Capsid
X Ray Crystallography
Lenses
Product Packaging
1 Citations

Engineering nanoreactors using bacterial microcompartment architectures

Plegaria, J. S. & Kerfeld, C. A. Jun 1 2018 In : Current Opinion in Biotechnology. 51, p. 1-7 7 p.

Research output: Contribution to journalReview article

Nanoreactors
Enzymes
Proteins
Carbon Cycle
Bacterial Genes

Functions of triacylglycerols during plant development and stress

Yang, Y. & Benning, C. Feb 1 2018 In : Current Opinion in Biotechnology. 49, p. 191-198 8 p.

Research output: Contribution to journalReview article

Plant Development
Triglycerides
Tissue
Pollination
Plant Oils

Incorporating population-level genetic variability within laboratory models in toxicology: From the individual to the population

Dornbos, P. & LaPres, J. J. Feb 15 2018 In : Toxicology. 395, p. 1-8 8 p.

Research output: Contribution to journalReview article

Population Genetics
Toxicology
Population
Risk assessment
Decision Making
2 Citations

Metabolism in cancer metastasis: bioenergetics, biosynthesis, and beyond

Teoh, S. T. & Lunt, S. Y. Mar 1 2018 In : Wiley Interdisciplinary Reviews: Systems Biology and Medicine. 10, 2, e1406

Research output: Contribution to journalReview article

Biosynthesis
Metabolism
Energy Metabolism
Cells
Neoplasm Metastasis
2 Citations

Modularity in Jasmonate Signaling for Multistress Resilience

Howe, G. A., Major, I. T. & Koo, A. J. Apr 29 2018 In : Annual Review of Plant Biology. 69, p. 387-415 29 p.

Research output: Contribution to journalReview article

protein-protein interactions
isoleucine
plant hormones
plant response
transcription factors

Perspectives on Sharing Models and Related Resources in Computational Biomechanics Research

Erdemir, A. , Hunter, P. J. , Holzapfel, G. A. , Loew, L. M. , Middleton, J. , Jacobs, C. R. , Nithiarasu, P. , Löhner, R. , Wei, G. , Winkelstein, B. A. , Barocas, V. H. , Guilak, F. , Ku, J. P. , Hicks, J. L. , Delp, S. L. , Sacks, M. , Weiss, J. A. , Ateshian, G. A. , Maas, S. A. , McCulloch, A. D. & 1 others Peng, G. C. Y. Feb 1 2018 In : Journal of Biomechanical Engineering. 140, 2, 024701

Research output: Contribution to journalReview article

Biomechanics
Biomechanical Phenomena
Research
Software
Biological Phenomena

The macromolecular machines that duplicate the escherichia coli chromosome as targets for drug discovery

Kaguni, J. M. Mar 14 2018 In : Antibiotics. 7, 1, 23

Research output: Contribution to journalReview article

Drug Discovery
Chromosomes
DNA Replication
Escherichia coli
DNA
2017
Aryl Hydrocarbon Receptors
Poisons
Gene expression
Chemical activation
Halogenated Hydrocarbons
2 Citations

Carboxysomes: metabolic modules for CO2 fixation

Turmo, A., Gonzalez-Esquer, C. R. & Kerfeld, C. A. Oct 2 2017 In : FEMS microbiology letters. 364, 18

Research output: Contribution to journalReview article

Oxygenases
Proteins
Carbonic Anhydrases
Cyanobacteria
Carbon Dioxide
8 Citations

Highly Signal-Responsive Gene Regulatory Network Governing Myxococcus Development

Kroos, L. Jan 1 2017 In : Trends in Genetics. 33, 1, p. 3-15 13 p.

Research output: Contribution to journalReview article

Myxococcus
Gene Regulatory Networks
Myxococcus xanthus
Streptomyces
Starvation
2 Citations

Kinetics of ligand binding through advanced computational approaches: A review

Dickson, A., Tiwary, P. & Vashisth, H. 2017 In : Current Topics in Medicinal Chemistry. 17, 23, p. 2626-2641 16 p.

Research output: Contribution to journalReview article

Ligands
Drug Design
Molecular Dynamics Simulation
Pharmacokinetics
Temperature
1 Citations

Profiling, characterization, and analysis of natural and synthetic acylsugars (sugar esters)

Ghosh, B. & Jones, A. D. Feb 14 2017 In : Analytical Methods. 9, 6, p. 892-905 14 p.

Research output: Contribution to journalReview article

Sugars
Esters
Metabolites
Carboxylic Acids
Carboxylic acids
2 Citations

Promiscuity, impersonation and accommodation: evolution of plant specialized metabolism

Leong, B. J. & Last, R. L. Dec 1 2017 In : Current Opinion in Structural Biology. 47, p. 105-112 8 p.

Research output: Contribution to journalReview article

Gene Duplication
Enzymes
Glucosinolates
Acyltransferases
Methyltransferases
2 Citations

Role of conformational change and K-path ligands in controlling cytochrome c oxidase activity

Liu, J., Hiser, C. & Ferguson-Miller, S. Oct 15 2017 In : Biochemical Society Transactions. 45, 5, p. 1087-1095 9 p.

Research output: Contribution to journalReview article

Electron Transport Complex IV
Ligands
Protons
Oxidation-Reduction
Catalytic Domain
3 Citations
Cyanobacteria
acclimation
color
photomorphogenesis
far-red light
2 Citations

Small peptide signaling pathways modulating macronutrient utilization in plants

de Bang, T. C., Lay, K. S., Scheible, W. R. & Takahashi, H. Oct 1 2017 In : Current Opinion in Plant Biology. 39, p. 31-39 9 p.

Research output: Contribution to journalReview article

peptides
uptake mechanisms
root systems
plant development
hormones
7 Citations
Dioxygenases
Oxygenases
Taurine
Dichroism
Circular Dichroism
3 Citations

Structure, function and evolution of the cyanobacterial orange carotenoid protein and its homologs

Kerfeld, C. A., Melnicki, M. R., Sutter, M. & Dominguez-Martin, M. A. Aug 1 2017 In : New Phytologist. 215, 3, p. 937-951 15 p.

Research output: Contribution to journalReview article

Carotenoids
carotenoids
Proteins
proteins
Phycobilisomes
5 Citations

Structure and functions of Orange Carotenoid Protein homologs in cyanobacteria

Bao, H., Melnicki, M. R. & Kerfeld, C. A. Jun 1 2017 In : Current Opinion in Plant Biology. 37, p. 1-9 9 p.

Research output: Contribution to journalReview article

Cyanobacteria
carotenoids
proteins
phycobilisome
fluorescence

The Ecstasy and Agony of Assay Interference Compounds

Aldrich, C., Bertozzi, C., Georg, G. I., Kiessling, L., Lindsley, C., Liotta, D., Merz, K. M., Schepartz, A. & Wang, S. Mar 15 2017 In : ACS Chemical Neuroscience. 8, 3, p. 420-423 4 p.

Research output: Contribution to journalReview article

1 Citations

Unexpected complexity in the lactate racemization system of lactic acid bacteria

Desguin, B., Soumillion, P., Hausinger, R. P. & Hols, P. Aug 1 2017 In : FEMS microbiology reviews. 41, 1, p. S71-S83

Research output: Contribution to journalReview article

lactate racemase
Lactic Acid
Bacteria
Nickel
Lactobacillus plantarum
2016
8 Citations

Advances in the development of class I phosphoinositide 3-kinase (PI3K) inhibitors

Sabbah, D. A., Hu, J. & Zhong, H. A. May 1 2016 In : Current Topics in Medicinal Chemistry. 16, 13, p. 1413-1426 14 p.

Research output: Contribution to journalReview article

1-Phosphatidylinositol 4-Kinase
Drug Design
Structure-Activity Relationship
Rheumatoid Arthritis
Cell Survival
5 Citations

Cyanobacterial ultrastructure in light of genomic sequence data

Gonzalez-Esquer, C. R., Smarda, J., Rippka, R., Axen, S. D., Guglielmi, G., Gugger, M. & Kerfeld, C. A. Aug 1 2016 In : Photosynthesis Research. 129, 2, p. 147-157 11 p.

Research output: Contribution to journalReview article

ultrastructure
Genes
Cyanobacteria
Genome
genomics
18 Citations

Fatty Acid Binding Protein-1 (FABP1) and the Human FABP1 T94A Variant: Roles in the Endocannabinoid System and Dyslipidemias

Schroeder, F., McIntosh, A. L., Martin, G. G., Huang, H., Landrock, D., Chung, S., Landrock, K. K., Dangott, L. J., Li, S., Kaczocha, M., Murphy, E. J., Atshaves, B. P. & Kier, A. B. Jun 1 2016 In : Lipids. 51, 6, p. 655-676 22 p.

Research output: Contribution to journalReview article

Fatty Acid-Binding Proteins
Endocannabinoids
Dyslipidemias
Liver
Ligands

Function of Polycomb repressive complexes in stem cells

He, J. 2016 In : Frontiers in Biology. 11, 2, p. 65-74 10 p.

Research output: Contribution to journalReview article

stem cells
Stem Cells
stem
Developmental Genes
CpG Islands
7 Citations

Iron-sulfur clusters in mitochondrial metabolism: Multifaceted roles of a simple cofactor

Stiban, J., So, M. & Kaguni, L. S. Oct 1 2016 In : Biochemistry (Moscow). 81, 10, p. 1066-1080 15 p.

Research output: Contribution to journalReview article

Mitochondria
Sulfur
Metabolism
Iron
Iron-Sulfur Proteins
9 Citations

Mechanisms and fitness implications of photomorphogenesis during chromatic acclimation in cyanobacteria

Montgomery, B. L. Jul 1 2016 In : Journal of Experimental Botany. 67, 14, p. 4079-4090 12 p.

Research output: Contribution to journalReview article

photomorphogenesis
Acclimatization
Cyanobacteria
acclimation
Color
24 Citations

Molecular dynamics simulations of biological membranes and membrane proteins using enhanced conformational sampling algorithms

Mori, T., Miyashita, N., Im, W., Feig, M. & Sugita, Y. Jul 1 2016 In : Biochimica et Biophysica Acta - Biomembranes. 1858, 7, p. 1635-1651 17 p.

Research output: Contribution to journalReview article

Biological membranes
Molecular Dynamics Simulation
Molecular dynamics
Membrane Proteins
Sampling
13 Citations

The plant lipidome in human and environmental health

Horn, P. J. & Benning, C. Sep 16 2016 In : Science. 353, 6305, p. 1228-11232 10005 p.

Research output: Contribution to journalReview article

Environmental Health
Fossil Fuels
Lipids
Synthetic Biology
Plant Oils
2012
4 Citations

Human metabolic network: Reconstruction, simulation, and applications in systems biology

Wu, M. & Chan, C. Mar 2 2012 In : Metabolites. 2, 1, p. 242-253 12 p.

Research output: Contribution to journalReview article

Systems Biology
Metabolic Networks and Pathways
Switzerland
Computer Simulation
Genotype
2007

Enemies of Promise: Publishing, Perishing, and the Eclipse of Scholarship

Montgomery, B. L. Feb 6 2007 In : On the Horizon. 15, 1, p. 38-43 6 p.

Research output: Contribution to journalReview article

2002

Gcn4 activator targets Gcn5 histone acetyltransferase to specific promoters independently of transcription

Kuo, M. H., Vom Baur, E., Struhl, K. & Allis, C. D. 2002 In : Chemtracts. 15, 3, p. 127-132 6 p.

Research output: Contribution to journalReview article

Histone Acetyltransferases
2001
1 Citations

The promise of agricultural biotechnology for human health

Tian, L. & Dellapenna, D. Dec 1 2001 In : British Food Journal. 103, 11, p. 777-779 3 p.

Research output: Contribution to journalReview article

agricultural biotechnology
Nutritive Value
Biotechnology
human health
nutritive value