Biosystems and Agricultural Engineering

Publications 1976 2018

2018
1 Citations

Anaerobic co-digestion of multiple agricultural residues to enhance biogas production in southern Italy

Valenti, F., Zhong, Y., Sun, M., Porto, S. M. C., Toscano, A., Dale, B. E., Sibilla, F. & Liao, W. Aug 1 2018 In : Waste Management. 78, p. 151-157 7 p.

Research output: Contribution to journalArticle

Agricultural wastes
Biogas
biogas
Feedstocks
digestion

Assessing the relative importance of parameter estimation in stream health based environmental justice modeling

Daneshvar, F., Nejadhashemi, A. P., Zhang, Z. & Herman, M. R. Aug 1 2018 In : Journal of Hydrology. 563, p. 211-222 12 p.

Research output: Contribution to journalArticle

environmental justice
Parameter estimation
Health
modeling
census
Silicate minerals
Food supply
Food Chain
Food Supply
Biosensing Techniques
Carbohydrates
Biosensors
Cyclic voltammetry
Bacteria
Liquids
1 Citations

Case study: Fixture water use and drinking water quality in a new residential green building

Salehi, M., Abouali, M., Wang, M., Zhou, Z., Nejadhashemi, A. P., Mitchell, J., Caskey, S. & Whelton, A. J. Mar 1 2018 In : Chemosphere. 195, p. 80-89 10 p.

Research output: Contribution to journalArticle

Water Quality
Drinking Water
Water
Sanitary Engineering
Gene Dosage

Characterization of individual human antibodies that bind pertussis toxin stimulated by acellular immunization

Acquaye-Seedah, E., Reczek, E. E., Russell, H. H., DiVenere, A. M., Sandman, S. O., Collins, J. H., Stein, C. A., Whitehead, T. A. & Maynard, J. A. Jun 1 2018 In : Infection and Immunity. 86, 6, e00004-18

Research output: Contribution to journalArticle

Pertussis Toxin
Immunization
Antibodies
Whooping Cough
Acellular Vaccines
1 Citations

Characterizing protein-protein interactions using deep sequencing coupled to yeast surface display

Medina-Cucurella, A. V. & Whitehead, T. A. Jan 1 2018 Methods in Molecular Biology. Humana Press Inc., p. 101-121 21 p. (Methods in Molecular Biology; vol. 1764)

Research output: Chapter in Book/Report/Conference proceedingChapter

High-Throughput Nucleotide Sequencing
Yeasts
Proteins
Mutagenesis
Epitopes
1 Citations

Control of hydrolytic degradation of Poly(lactic acid) by incorporation of chain extender: From bulk to surface erosion

Iñiguez-Franco, F., Auras, R., Ahmed, J., Selke, S., Rubino, M., Dolan, K. & Soto-Valdez, H. May 1 2018 In : Polymer Testing. 67, p. 190-196 7 p.

Research output: Contribution to journalArticle

Polymer blends
Lactic acid
Erosion
Rate constants
Thermodynamic stability
2 Citations

Cytochrome-P450-Induced Ordering of Microsomal Membranes Modulates Affinity for Drugs

Barnaba, C., Sahoo, B. R., Ravula, T., Medina-Meza, I. G., Im, S. C., Anantharamaiah, G. M., Waskell, L. & Ramamoorthy, A. Mar 19 2018 In : Angewandte Chemie - International Edition. 57, 13, p. 3391-3395 5 p.

Research output: Contribution to journalArticle

Slip forming
Biophysics
Water recycling
Chemical cleaning
Mammals

Development of non-parametric evolutionary algorithm for predicting soil moisture dynamics

Shin, Y., Mohanty, B. P. & Ines, A. V. M. Sep 1 2018 In : Journal of Hydrology. 564, p. 208-221 14 p.

Research output: Contribution to journalArticle

Soil moisture
Evolutionary algorithms
soil moisture
Rain
Satellites
4 Citations

Direct colorimetric detection of unamplified pathogen DNA by dextrin-capped gold nanoparticles

Baetsen-Young, A. M., Vasher, M., Matta, L. L., Colgan, P., Alocilja, E. C. & Day, B. Mar 15 2018 In : Biosensors and Bioelectronics. 101, p. 29-36 8 p.

Research output: Contribution to journalArticle

Pathogens
Gold
Nanoparticles
DNA
Single-Stranded DNA
Blueberry Plants
Vaccinium corymbosum
blueberries
Anthocyanins
juices

Evaluating the role of evapotranspiration remote sensing data in improving hydrological modeling predictability

Herman, M. R., Nejadhashemi, A. P., Abouali, M., Hernandez-Suarez, J. S., Daneshvar, F., Zhang, Z., Anderson, M. C., Sadeghi, A. M., Hain, C. R. & Sharifi, A. Jan 1 2018 In : Journal of Hydrology. 556, p. 39-49 11 p.

Research output: Contribution to journalArticle

hydrological modeling
evapotranspiration
remote sensing
streamflow
calibration

Global Distribution of Human-Associated Fecal Genetic Markers in Reference Samples from Six Continents

Mayer, R. E. , Reischer, G. H. , Ixenmaier, S. K. , Derx, J. , Blaschke, A. P. , Ebdon, J. E. , Linke, R. , Egle, L. , Ahmed, W. , Blanch, A. R. , Byamukama, D. , Savill, M. , Mushi, D. , Cristóbal, H. A. , Edge, T. A. , Schade, M. A. , Aslan, A. , Brooks, Y. M. , Sommer, R. , Masago, Y. & 10 others Sato, M. I., Taylor, H. D., Rose, J. B., Wuertz, S., Shanks, O. C., Piringer, H., Mach, R. L., Savio, D., Zessner, M. & Farnleitner, A. H. May 1 2018 In : Environmental Science and Technology. 52, 9, p. 5076-5084 9 p.

Research output: Contribution to journalArticle

reference sample
genetic marker
Wastewater
Pollution
Water

Hydrogen network optimization by integrating impurity distributions of a fluid catalytic cracker and hydrogenation reaction kinetics

Wu, L., Liang, X., Kang, L., Liu, Y. & Saffron, C. M. Aug 10 2018 In : Journal of Cleaner Production. 192, p. 542-552 11 p.

Research output: Contribution to journalArticle

reaction kinetics
Reaction kinetics
Hydrogenation
Fluid catalytic cracking
hydrogen

Inoculation protocols influence the thermal resistance of salmonella Enteritidis PT 30 in fabricated almond, wheat, and date products

Limcharoenchat, P., Buchholz, S. E., James, M. K., Hall, N. O., Ryser, E. T. & Marks, B. P. Apr 1 2018 In : Journal of food protection. 81, 4, p. 606-613 8 p.

Research output: Contribution to journalArticle

Salmonella enteritidis
Salmonella Enteritidis
almonds
Ointments
Salmonella

Integrated experimental and technoeconomic evaluation of two-stage Cu-catalyzed alkaline-oxidative pretreatment of hybrid poplar

Bhalla, A., Fasahati, P., Particka, C. A., Assad, A. E., Stoklosa, R. J., Bansal, N., Semaan, R., Saffron, C. M., Hodge, D. B. & Hegg, E. L. May 17 2018 In : Biotechnology for Biofuels. 11, 1, 143

Research output: Contribution to journalArticle

Hydrolysis
Temperature
Ethanol
Costs and Cost Analysis
Water

Lipid-exchange in nanodiscs discloses membrane boundaries of cytochrome-P450 reductase

Barnaba, C., Ravula, T., Medina-Meza, I. G., Im, S. C., Anantharamaiah, G. M., Waskell, L. & Ramamoorthy, A. Jan 1 2018 In : Chemical Communications. 54, 49, p. 6336-6339 4 p.

Research output: Contribution to journalArticle

Water recycling
Lipids
Membranes
Unsaturated polymers
Ethanolamines

Migration of antioxidants from polylactic acid films, a parameter estimation approach: Part I – A model including convective mass transfer coefficient

Samsudin, H., Auras, R., Burgess, G., Dolan, K. & Soto-Valdez, H. Mar 1 2018 In : Food Research International. 105, p. 920-929 10 p.

Research output: Contribution to journalArticle

polylactic acid
partition coefficients
Antioxidants
mass transfer
Polymer films
Cucumis sativus
Fruits
Glycerol
Freezing
Fermentation

Pro region engineering of nerve growth factor by deep mutational scanning enables a yeast platform for conformational epitope mapping of anti-NGF monoclonal antibodies

Medina-Cucurella, A. V., Zhu, Y., Bowen, S. J., Bergeron, L. M. & Whitehead, T. A. Jan 1 2018 (Accepted/In press) In : Biotechnology and Bioengineering.

Research output: Contribution to journalArticle

Engine mountings
Hangars
Epitope Mapping
Epitopes
Monoclonal antibodies

Responses of Soybean to Water Stress and Supplemental Irrigation in Upper Indo-Gangetic Plain: Field Experiment and Modeling Approach

Jha, P. K., Kumar, S. N. & Ines, A. V. M. Apr 15 2018 In : Field Crops Research. 219, p. 76-86 11 p.

Research output: Contribution to journalArticle

water stress
soybean
irrigation
soybeans
modeling

Salmonella risks due to consumption of aquaculture-produced shrimp

Hamilton, K. A., Chen, A., de-Graft Johnson, E., Gitter, A., Kozak, S., Niquice, C., Zimmer-Faust, A. G., Weir, M. H., Mitchell, J. & Gurian, P. L. Jan 1 2018 (Accepted/In press) In : Microbial Risk Analysis.

Research output: Contribution to journalArticle

Aquaculture
Seafood
Salmonella
Cooking
Food Handling

SIMAGRI: An agro-climate decision support tool

Han, E., Baethgen, W. E., Ines, A. V. M., Mer, F., Souza, J. S., Berterretche, M., Atunez, G. & Barreira, C. Jan 1 2018 (Accepted/In press) In : Computers and Electronics in Agriculture.

Research output: Contribution to journalArticle

Crops
climate
crop
management practice
crops

The role of cholesterol oxidation products in food toxicity

Maldonado-Pereira, L., Schweiss, M., Barnaba, C. & Medina-Meza, I. G. Aug 1 2018 In : Food and Chemical Toxicology. 118, p. 908-939 32 p.

Research output: Contribution to journalReview article

food intoxication
Poisons
Cholesterol
cholesterol
oxidation

Transformation, Conjugation, and Sequestration Following the Uptake of Triclocarban by Jalapeno Pepper Plants

Huynh, K., Banach, E. & Reinhold, D. Apr 25 2018 In : Journal of Agricultural and Food Chemistry. 66, 16, p. 4032-4043 12 p.

Research output: Contribution to journalArticle

Capsicum
pepper
uptake mechanisms
fruits
metabolites
2017

A dairy long day lighting success story: MI dairy increases production and cuts costs

Thomas, A., Thelen, J., Go, A., Surbrook, T., Vanee, M. & Althouse, J. Jan 1 2017 2017 ASABE Annual International Meeting. American Society of Agricultural and Biological Engineers

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Dairies
lighting
dairies
Lighting
milk production
2 Citations

A peptide mimic of an antibody

Whitehead, T. A. Oct 27 2017 In : Science. 358, 6362, p. 450-451 2 p.

Research output: Contribution to journalComment/debate

Peptide Library
Epitopes
Amino Acid Sequence
Monoclonal Antibodies
Peptides

Applicability of Benford’s Law to Compliance Assessment of Self-Reported Wastewater Treatment Plant Discharge Data

Beiglou, P. H. B., Gibbs, C., Rivers, L., Adhikari, U. & Mitchell, J. 2017 (Accepted/In press) In : Journal of Environmental Assessment Policy and Management.

Research output: Contribution to journalArticle

compliance
Law
fraud
resource
wastewater treatment plant

Applications of computational fluid dynamics in fish and habitat studies

Daneshvar, F., Nejadhashemi, A. P., Woznicki, S. A. & Herman, M. R. Jan 1 2017 In : Ecohydrology and Hydrobiology. 17, 1, p. 53-62 10 p.

Research output: Contribution to journalReview article

computational fluid dynamics
fluid mechanics
secondary flow
habitat
fish
3 Citations

Approaches for adding value to anaerobically digested dairy fiber

Pelaez-Samaniego, M. R., Hummel, R. L., Liao, W., Ma, J., Jensen, J., Kruger, C. & Frear, C. May 1 2017 In : Renewable and Sustainable Energy Reviews. 72, p. 254-268 15 p.

Research output: Contribution to journalReview article

Dairies
Fibers
Manures
Gasification
Composite materials
2 Citations

Aquarium viromes: Viromes of human-Managed aquatic systems

Kim, Y., Van Bonn, W. V., Aw, T. G. & Rose, J. B. Jun 30 2017 In : Frontiers in Microbiology. 8, JUN, 1231

Research output: Contribution to journalArticle

Practice Management
Microbial Drug Resistance
Caudovirales
Ecosystem
Swimming Pools
4 Citations

A self-sustaining high-strength wastewater treatment system using solar-bio-hybrid power generation

Bustamante, M. & Liao, W. 2017 In : Bioresource Technology. 234, p. 415-423 9 p.

Research output: Contribution to journalArticle

Biofuels
Solar system
Biogas
biogas
power generation

Benign Fractionation of Lignin with CO2-Expanded Solvents of Acetic Acid + Water

Klett, A. S., Payne, A. M., Phongpreecha, T., Hodge, D. B. & Thies, M. C. Aug 30 2017 In : Industrial and Engineering Chemistry Research. 56, 34, p. 9778-9782 5 p.

Research output: Contribution to journalArticle

Lignin
Carbon Monoxide
Fractionation
Acetic acid
Acetic Acid
10 Citations
Blueberry Plants
Catechol Oxidase
Vaccinium corymbosum
heat inactivation
blueberries
1 Citations

Climate-Agriculture-Modeling and Decision Tool (CAMDT): A software framework for climate risk management in agriculture

Han, E., Ines, A. V. M. & Baethgen, W. E. Sep 1 2017 In : Environmental Modelling and Software. 95, p. 102-114 13 p.

Research output: Contribution to journalArticle

Risk management
Agriculture
Crops
agriculture
software
14 Citations

Climate change and livestock: Impacts, adaptation, and mitigation

Rojas-Downing, M. M., Nejadhashemi, A. P., Harrigan, T. & Woznicki, S. A. 2017 In : Climate Risk Management. 16, p. 145-163 19 p.

Research output: Contribution to journalReview article

livestock farming
livestock
mitigation
climate change
food security
1 Citations

Comparing thermal process validation methods for salmonella inactivation on almond Kernels

Jeong, S., Marks, B. P. & James, M. K. Jan 1 2017 In : Journal of Food Protection. 80, 1, p. 169-176 8 p.

Research output: Contribution to journalArticle

almonds
Salmonella
inactivation
Hot Temperature
heat
9 Citations

Conversion of corn stover alkaline pre-treatment waste streams into biodiesel via Rhodococci

Le, R. K., Wells, T., Das, P., Meng, X., Stoklosa, R. J., Bhalla, A., Hodge, D. B., Yuan, J. S. & Ragauskas, A. J. 2017 In : RSC Advances. 7, 7, p. 4108-4115 8 p.

Research output: Contribution to journalArticle

Waste treatment
Biofuels
Alkalies
Biodiesel
Cellulosic ethanol

Corrigendum to "Effects of coffee processing residues on anaerobic microorganisms and corresponding digestion performance" [Bioresour. Technol. 245 (2017) 714-723]

Rojas-Sossa, J. P., Murillo-Roos, M., Uribe, L., Uribe-Lorio, L., Marsh, T., Larsen, N., Chen, R., Miranda, A., Solís, K., Rodriguez, W., Kirk, D. & Liao, W. Jan 1 2017 (Accepted/In press) In : Bioresource Technology.

Research output: Contribution to journalArticle

Coffee
coffee
Microorganisms
digestion
Genes
11 Citations

Deep sequencing methods for protein engineering and design

Wrenbeck, E. E., Faber, M. S. & Whitehead, T. A. Aug 1 2017 In : Current Opinion in Structural Biology. 45, p. 36-44 9 p.

Research output: Contribution to journalReview article

Protein Engineering
High-Throughput Nucleotide Sequencing
Proteins
HIV-1
Epitopes
11 Citations

Development and evaluation of a comprehensive drought index

Esfahanian, E., Nejadhashemi, A. P., Abouali, M., Adhikari, U., Zhang, Z., Daneshvar, F. & Herman, M. R. Jan 1 2017 In : Journal of Environmental Management. 185, p. 31-43 13 p.

Research output: Contribution to journalArticle

Drought
drought
index
evaluation
Health
2 Citations

Development of a microbial dose response visualization and modelling application for QMRA modelers and educators

Weir, M. H., Mitchell, J., Flynn, W. & Pope, J. M. Feb 1 2017 In : Environmental Modelling and Software. 88, p. 74-83 10 p.

Research output: Contribution to journalArticle

visualization
Visualization
modeling
Maximum likelihood estimation
dose
downscaling
agriculture
climate
rainfall
weather
frozen vegetables
Brassica
broccoli
Brassica oleracea
Microwaves
2 Citations

Effect of nanoparticles on the hydrolytic degradation of PLA-nanocomposites by water-ethanol solutions

Iñiguez-Franco, F., Auras, R., Rubino, M., Dolan, K., Soto-Valdez, H. & Selke, S. Dec 1 2017 In : Polymer Degradation and Stability. 146, p. 287-297 11 p.

Research output: Contribution to journalArticle

Nanocomposites
nanocomposites
Ethanol
ethyl alcohol
degradation
1 Citations

Effects of coffee processing residues on anaerobic microorganisms and corresponding digestion performance

Rojas-Sossa, J. P., Murillo-Roos, M., Uribe, L., Uribe-Lorio, L., Marsh, T., Larsen, N., Chen, R., Miranda, A., Solís, K., Rodriguez, W., Kirk, D. & Liao, W. Dec 1 2017 In : Bioresource Technology. 245, p. 714-723 10 p.

Research output: Contribution to journalArticle

Methanogens
Coffee
Biofuels
Biogas
Methane
1 Citations

Effects of protein and lignin on cellulose and xylan anaylses of lignocellulosic biomass

MacLellan, J., Chen, R., Yue, Z., Kraemer, R., Liu, Y. & Liao, W. Jun 1 2017 In : Journal of Integrative Agriculture. 16, 6, p. 1268-1275 8 p.

Research output: Contribution to journalArticle

Xylans
Lignin
xylan
Cellulose
Biomass
Lubricating greases
Oils and fats
Wastewater
Enzymes
Soils
Vaccinium macrocarpon
cranberries
Anthocyanins
Ascorbic Acid
anthocyanins