Publications 1995 2017

  • 13 h-Index
  • 34 Article
  • 8 Conference contribution
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2017

Use of Brevibacillus choshinensis for the production of biologically active brain-derived neurotrophic factor (BDNF)

Angart, P. A., Carlson, R. J., Thorwall, S. & Patrick Walton, S. May 2 2017 In : Applied Microbiology and Biotechnology. p. 1-8 8 p.

Research output: Contribution to journalArticle

Brevibacillus
Brain-Derived Neurotrophic Factor
Proteins
Cystine
Nervous System Diseases
2016

Characterization of transcription factor response kinetics in parallel

Bilgin, B., Nath, A., Chan, C. & Walton, S. P. 2016 In : BMC Biotechnology. 16, 1, 62

Research output: Contribution to journalArticle

Transcription Factors
Palmitic Acid
Tumor Necrosis Factor-alpha
Glucocorticoid Receptors
TATA-Box Binding Protein

Terminal Duplex Stability and Nucleotide Identity Differentially Control siRNA Loading and Activity in RNA Interference

Angart, P. A., Carlson, R. J., Adu-Berchie, K. & Walton, S. P. Oct 1 2016 In : Nucleic Acid Therapeutics. 26, 5, p. 309-317 9 p.

Research output: Contribution to journalArticle

RNA Interference
Small Interfering RNA
Nucleotides
Bibliography of Medicine
RNA-Induced Silencing Complex
2015
3 Citations

Brain derived neurotrophic factor release from layer-by-layer coated agarose nerve guidance scaffolds

Lynam, D. A., Shahriari, D., Wolf, K. J., Angart, P. A., Koffler, J., Tuszynski, M. H., Chan, C., Walton, P. & Sakamoto, J. May 1 2015 In : Acta Biomaterialia. 18, p. 128-131 4 p.

Research output: Contribution to journalArticle

Brain-Derived Neurotrophic Factor
Sepharose
Brain
Hydrogen
Scaffolds
1 Citations

How can novel microscopic approaches shed light on the function of nucleic acid-based drugs?

Vocelle, D., Chan, C. & Walton, S. P. Sep 1 2015 In : Future Medicinal Chemistry. 7, 13, p. 1623-1625 3 p.

Research output: Contribution to journalArticle

Nucleic Acids
2014
4 Citations

Improved asymmetry prediction for short interfering RNAs

Malefyt, A. P., Wu, M., Vocelle, D. B., Kappes, S. J., Lindeman, S. D., Chan, C. & Walton, S. P. Jan 2014 In : FEBS Journal. 281, 1, p. 320-330 11 p.

Research output: Contribution to journalArticle

Small Interfering RNA
Airway Obstruction
Thermodynamics
Clodronic Acid
RNA Interference
2013
13 Citations

Design of siRNA therapeutics from the molecular scale

Angart, P., Vocelle, D., Chan, C. & Patrick Walton, S. Mar 25 2013 In : Pharmaceuticals. 6, 4, p. 440-468 29 p.

Research output: Contribution to journalArticle

Small Interfering RNA
Drug Industry
RNA Interference
Biological Processes
Nucleic Acids
7 Citations

Quantitative, solution-phase profiling of multiple transcription factors in parallel

Bilgin, B., Liu, L., Chan, C. & Patrick Walton, S. Mar 2013 In : Analytical and Bioanalytical Chemistry. 405, 8, p. 2461-2468 8 p.

Research output: Contribution to journalArticle

Transcription Factors
Genes
Cyclic AMP Receptor Protein
Beryllium
Breast Neoplasms
2012

Chemical engineering (and materials science and engineering)

Patrick Walton, S., Ofoli, R. Y., Depriest, J. L. & Seeley, L. A. Jun 2012 In : Chemical Engineering Education. 46, 3, p. 146-151 6 p.

Research output: Contribution to journalArticle

Caprylates
Aldehyde Reductase
Chemical engineering
Education
Materials science
10 Citations

Latest developments in experimental and computational approaches to characterize protein-lipid interactions

Cho, H., Wu, M., Bilgin, B., Walton, S. P. & Chan, C. Nov 2012 In : Proteomics. 12, 22, p. 3273-3285 13 p.

Research output: Contribution to journalArticle

Lipids
Proteins
Technology
Acyclic Acids
DNA
1 Citations

Text messaging as a tool for engaging chemical engineering students

Walton, S. P., Briedis, D., Lindeman, S. D., Malefyt, A. P. & Sticklen, J. Mar 2012 In : Chemical Engineering Education. 46, 2, p. 80-86 7 p.

Research output: Contribution to journalArticle

Text messaging
Chemical engineering
Students
2011
3 Citations

Molecular mechanism by which palmitate inhibits PKR autophosphorylation

Cho, H., Mukherjee, S., Palasuberniam, P., Pillow, L., Bilgin, B., Nezich, C., Walton, S. P., Feig, M. & Chan, C. Feb 15 2011 In : Biochemistry. 50, 6, p. 1110-1119 10 p.

Research output: Contribution to journalArticle

Palmitates
Phosphotransferases
Adenosine Triphosphate
Binding Sites
Proteins

Special session: What works to retain students in chemical engineering programs

Minerick, A. R., Visco, D. P., Montgomery, S. M., Briedis, D., Buch, N., Sticklen, J., McDonough, C. A., Walton, S. P., Portis, A. M., Chimowitz, E. H., Rochefort, W. E., Levien, K. L., Elbashir, N., Condit, J. & Lindeman, S. 2011 In : ASEE Annual Conference and Exposition, Conference Proceedings.

Research output: Contribution to journalArticle

3 Citations

Synergy analysis reveals association between insulin signaling and desmoplakin expression in palmitate treated HepG2 cells

Wang, X., Nath, A., Yang, X., Portis, A., Walton, S. P. & Chan, C. Nov 23 2011 In : PLoS One. 6, 11, e28138

Research output: Contribution to journalArticle

Desmoplakins
Palmitates
Hep G2 Cells
Insulin
palmitates
2010
14 Citations

Confocal microscopy for the analysis of siRNA delivery by polymeric nanoparticles

Portis, A. M., Carballo, G., Baker, G. L., Chan, C. & Walton, S. P. Sep 2010 In : Microscopy Research and Technique. 73, 9, p. 878-885 8 p.

Research output: Contribution to journalArticle

Confocal Microscopy
Nanoparticles
Small Interfering RNA
RNA
delivery
46 Citations

Designing highly active siRNAs for therapeutic applications

Patrick Walton, S., Wu, M., Gredell, J. A. & Chan, C. Dec 2010 In : FEBS Journal. 277, 23, p. 4806-4813 8 p.

Research output: Contribution to journalArticle

Small Interfering RNA
RNA Interference
Thermodynamics
Messenger RNA
Inborn Errors Amino Acid Metabolism
17 Citations

Development of a dual-aptamer-based multiplex protein biosensor

Xie, S. & Walton, S. P. Aug 2010 In : Biosensors and Bioelectronics. 25, 12, p. 2663-2668 6 p.

Research output: Contribution to journalArticle

Biosensing Techniques
Proteins
Biosensors
Platelet-Derived Growth Factor
Biological Processes
1 Citations

Engineering active siRNA therapeutics

Patrick Walton, S. Dec 2010 In : FEBS Journal. 277, 23, p. 4805 1 p.

Research output: Contribution to journalArticle

Small Interfering RNA
32 Citations

Recognition of siRNA asymmetry by TAR RNA binding protein

Gredell, J. A., Dittmer, M. J., Wu, M., Chan, C. & Walton, S. P. Apr 13 2010 In : Biochemistry. 49, 14, p. 3148-3155 8 p.

Research output: Contribution to journalArticle

RNA-Binding Proteins
Small Interfering RNA
RNA-Induced Silencing Complex
Proteins
Bibliography of Medicine
2009
6 Citations

Application and analysis of structure-switching aptamers for small molecule quantification

Xie, S. & Walton, S. P. Apr 13 2009 In : Analytica Chimica Acta. 638, 2, p. 213-219 7 p.

Research output: Contribution to journalArticle

Molecules
Biosensing Techniques
nucleic acid
Bicyclo Compounds
Biosensors
9 Citations

Effect of siRNA terminal mismatches on TRBP and Dicer binding and silencing efficacy

Kini, H. K. & Walton, S. P. Nov 2009 In : FEBS Journal. 276, 22, p. 6576-6585 10 p.

Research output: Contribution to journalArticle

Small Interfering RNA
RNA-Binding Proteins
Nucleotides
Fusobacterium
RNA-Induced Silencing Complex
8 Citations

Emerging affinity-based techniques in proteomics

Xie, S., Moya, C., Bilgin, B., Jayaraman, A. & Walton, S. P. Oct 2009 In : Expert Review of Proteomics. 6, 5, p. 573-583 11 p.

Research output: Contribution to journalArticle

Proteomics
Proteome
Proteins
Buccal Administration
Spontaneous Fractures
4 Citations

Proteomics: Technology development and applications

Walton, S. P. & Jayaraman, A. Feb 2009 In : Expert Review of Proteomics. 6, 1, p. 23-25 3 p.

Research output: Contribution to journalArticle

Proteomics
Technology
Acyclic Acids
Engineers
Electrophoresis
2008
36 Citations

Impact of target mRNA structure on siRNA silencing efficiency: A large-scale study

Gredell, J. A., Berger, A. K. & Walton, S. P. Jul 1 2008 In : Biotechnology and Bioengineering. 100, 4, p. 744-755 12 p.

Research output: Contribution to journalArticle

Small Interfering RNA
Messenger RNA
Gene Silencing
Cyclic AMP Receptor Protein
Genes
2007
14 Citations

In vitro binding of single-stranded RNA by human Dicer

Kini, H. K. & Walton, S. P. Dec 11 2007 In : FEBS Letters. 581, 29, p. 5611-5616 6 p.

Research output: Contribution to journalArticle

RNA
In Vitro Techniques
Hydroxyl Radical
Double-Stranded RNA
Divalent Cations
2006
7 Citations

Analysis of hybridization on the molecular barcode GeneChip microarray

Walton, S. P., Mindrinos, M. N. & Davis, R. W. Sep 22 2006 In : Biochemical and Biophysical Research Communications. 348, 2, p. 689-696 8 p.

Research output: Contribution to journalArticle

Microarray Analysis
Systems Analysis
Polymerase Chain Reaction
Canidae
Acromegaly
1 Citations

Biological network analyses: Computational genomics and systems approaches

Walton, S. P., Li, Z. & Chan, C. Jan 1 2006 In : Molecular Simulation. 32, 3-4, p. 203-209 7 p.

Research output: Contribution to journalArticle

Throughput
Lutheran Blood-Group System
Caprylates
Metabolomics
Systems Biology
2002
45 Citations

Thermodynamic and kinetic characterization of antisense oligodeoxynucleotide binding to a structured mRNA

Patrick Walton, S., Stephanopoulos, G. N., Yarmush, M. L. & Roth, C. M. 2002 In : Biophysical Journal. 82, 1, p. 366-377 12 p.

Research output: Contribution to journalArticle

Oligodeoxyribonucleotides
Thermodynamics
Messenger RNA
RNA
beta-Globins
2001
10 Citations

Coupling of inflammatory cytokine signaling pathways probed by measurements of extracellular acidification rate

Roth, C. M., Kohen, R. L., Walton, S. P. & Yarmush, M. L. Jan 31 2001 In : Biophysical Chemistry. 89, 1, p. 1-12 12 p.

Research output: Contribution to journalArticle

Interleukin-1
Cytokines
cells
Hep G2 Cells
Fluorinated Steroids
25 Citations

Rational selection and quantitative evaluation of antisense oligonucleotides

Jayaraman, A., Walton, S. P., Yarmush, M. L. & Roth, C. M. Aug 30 2001 In : Biochimica et Biophysica Acta - Gene Structure and Expression. 1520, 2, p. 105-114 10 p.

Research output: Contribution to journalArticle

Antisense Oligonucleotides
Oligonucleotides
Messenger RNA
Gene Expression
Gene expression
1999
39 Citations

Prediction of antisense oligonucleotide binding affinity to a structured RNA target

Walton, S. P., Stephanopoulos, G. N., Yarmush, M. L. & Roth, C. M. Oct 5 1999 In : Biotechnology and Bioengineering. 65, 1, p. 1-9 9 p.

Research output: Contribution to journalArticle

Antisense Oligonucleotides
RNA
Messenger RNA
Oligonucleotides
beta-Globins
1998
17 Citations

Visualization of the hinge flow in a 5: 1 scaled model of the medtronic parallel bileaflet heart valve prosthesis

Healy, T. M., Fontaine, A. A., Ellis, J. T., Walton, S. P. & Yoganathan, A. P. 1998 In : Experiments in Fluids. 25, 5-6, p. 512-518 7 p.

Research output: Contribution to journalArticle

Anthralin
Fluorouracil
Hinges
heart valves
hinges
1996
15 Citations

Comparison of magnetic resonance imaging and laser doppler anemometry velocity measurements downstream of replacement heart valves: Implications for in vivo assessment of prosthetic valve function

Fontaine, A. A., Heinrich, R. S., Walker, P. G., Pedersen, E. M., Scheidegger, M. B., Boesiger, P., Walton, S. P. & Yoganathan, A. P. Jan 1996 In : Journal of Heart Valve Disease. 5, 1, p. 66-73 8 p.

Research output: Contribution to journalArticle

Heart Valves
Lasers
Magnetic Resonance Imaging
Culture Diffusion Chambers
Hemodynamics
1995
27 Citations

Magnetic resonance velocity imaging: A new method for prosthetic heart valve study

Walker, P. G., Pedersen, E. M., Oyre, S., Flepp, L., Ringgaard, S., Heinrich, R. S., Walton, S. P., Hasenkam, J. M., Jorgensen, H. S. & Yoganathan, A. P. 1995 In : Journal of Heart Valve Disease. 4, 3, p. 296-307 12 p.

Research output: Contribution to journalArticle

Heart Valves
Magnetic Resonance Spectroscopy
Magnetic Resonance Imaging
Magnetic Fields
In Vitro Techniques